De Profundis

me

Molecular biologist and bioinformatician at the First Faculty of Medicine, Charles University in BIOCEV and the Institute of Medical Biochemistry and Laboratory Diagnostics at the General University Hospital

Full stack scientist (wet & dry lab work): clinical proteomics & analysis of proteomic and genomic data. I've got my M.O. (modus operandi): designing web applications for niche life science scrutiny. Besides this I play the cello and tame my kids. This website is a portfolio of my projects and space to write about stuff that I find interesting.

Portfolio

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Proteomics

Research activities, list of publications

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Bourne again Oncogenetics

Bash scripts for oncogenetics purposes

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Human IMPs

Web app integrating human proteome annotation data from Uniprot with the results of algorithms predicting transmembrane alpha helices.

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Data analysis in R

Overview of what I've been up to using R so far

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Web development

Sometimes full stack, sometimes backend

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Boxyplots

Web app for creating boxplots with basic statistics

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Overly wise millennial journal

The urge to write a blog hasn't disappeared since 2001, there was just time I was wiser. In Czech.

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Web scraping & data analysis

Usecase: data from bezrealitky.cz

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Violoncello

Orchestral repertoire

You can catch me here (sometimes)

  • Průmyslová 595
  • 252 50 Vestec
  • +420 325 873 010
  • ondrvit@gmail.com
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